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This PR adds the backend functionality that allows the JSON report data generated by flowcraft pipelines to be provided to the web application for report rendering and visualization.

The data and format of the JSON report data have been discussed and specified here and is now part of the developer docs.

ODiogoSilva and others added 30 commits June 18, 2018 09:53
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codecov-io commented Sep 19, 2018

Codecov Report

Merging #127 into dev will decrease coverage by 3.54%.
The diff coverage is 8.66%.

Impacted file tree graph

@@            Coverage Diff             @@
##              dev     #127      +/-   ##
==========================================
- Coverage   42.37%   38.82%   -3.55%     
==========================================
  Files          53       58       +5     
  Lines        4928     5502     +574     
==========================================
+ Hits         2088     2136      +48     
- Misses       2840     3366     +526
Impacted Files Coverage Δ
flowcraft/generator/header_skeleton.py 100% <ø> (ø) ⬆️
flowcraft/templates/mapping2json.py 0% <ø> (ø) ⬆️
flowcraft/generator/components/metagenomics.py 100% <ø> (ø) ⬆️
flowcraft/generator/components/annotation.py 78.12% <ø> (ø) ⬆️
flowcraft/generator/components/phylogeny.py 100% <ø> (ø) ⬆️
flowcraft/templates/mashscreen2json.py 0% <ø> (ø) ⬆️
flowcraft/generator/components/mapping.py 100% <ø> (ø) ⬆️
flowcraft/templates/skesa.py 0% <ø> (ø) ⬆️
flowcraft/generator/components/typing.py 100% <ø> (ø) ⬆️
flowcraft/templates/trimmomatic.py 0% <0%> (ø) ⬆️
... and 25 more

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@ODiogoSilva ODiogoSilva merged commit 6ef0294 into dev Sep 21, 2018
@ODiogoSilva ODiogoSilva deleted the reports branch September 21, 2018 20:09
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6 participants